下肢动脉硬化闭塞症膝下病变潜在机制的加权基因共表达网络和免疫浸润分析
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(1.徐州市中心医院检验科,江苏省徐州市221009;2.济南市中医医院周围血管病科,山东省济南市250012)

作者简介:

李见,硕士研究生,检验师,主要从事临床检验工作,E-mail:li_jian_400428@163.com。

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山东省自然科学基金项目(ZR2017MH038);山东省医药卫生科技发展计划(2018WS478);济南市临床医学科技创新计划(202134013)


Analysis of potential mechanisms of below-the-knee atherosclerosis obliteran based on weighted correlation network analysis and immune infiltration
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1.Department of Clinical Laboratory, Xuzhou Central Hospital, Xuzhou, Jiangsu 221009, China;2.Department of Peripheral Vascular Disease, Jinan Municipal Hospital of Traditional Chinese Medicine, Jinan, Shandong 250012, China)

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    摘要:

    目的]探讨下肢动脉硬化闭塞症膝下病变的潜在机制和免疫相关性。 [方法]从高通量基因表达数据库下载GSE100927数据集,利用R语言软件Limma数据包和加权基因共表达网络分析筛选与下肢动脉硬化闭塞症膝下病变相关的基因并进行信号通路富集分析;构建蛋白-蛋白相互作用网络并筛选下肢动脉硬化闭塞症膝下病变相关的核心基因,分析核心基因在下肢动脉硬化闭塞症膝下病变样本与对照样本间的差异,利用受试者工作特征曲线下面积评价核心基因的诊断效能。采用反卷积算法(CIBERSORT)评估各样本中免疫细胞分布并计算不同免疫细胞在下肢动脉硬化闭塞症膝下病变样本与对照样本间的差异。 [结果]筛选获得下肢动脉硬化闭塞症膝下病变差异表达上调基因153个,差异表达下调基因63个,加权基因共表达网络分析结果表明下肢动脉硬化闭塞症膝下病变基因差异表达以上调为主,涉及胆固醇代谢、血小板活化等信号通路;蛋白酪氨酸磷酸酶受体C型(PTPRC)、Spi-1原癌基因(SPI1)、集落刺激因子1受体(CSF1R)和Fcγ受体Ⅲa(FCGR3A)可能是下肢动脉硬化闭塞症膝下病变的核心基因,且诊断效能较好。下肢动脉硬化闭塞症膝下病变与单核细胞的浸润程度呈正相关(r=0.419,P=0.037),与M2型巨噬细胞的浸润程度呈负相关(r=-0.491,P=0.013)。 [结论]下肢动脉硬化闭塞症膝下病变涉及胆固醇代谢、血小板活化等多种信号通路;与单核细胞、巨噬细胞介导的免疫反应密切相关;PTPRC、SPI1、CSF1R和FCGR3A可能是下肢动脉硬化闭塞症膝下病变的核心基因。

    Abstract:

    Aim To investigate the potential mechanisms and immunological correlation of below-the-knee atherosclerosis obliteran (BTK). Methods The GSE100927 dataset was downloaded from the Gene Expression Omnibus.Differentially expressed genes of BTK were screened by using “limma” package of the R and weighted correlation network analysis (WGCNA). Signaling pathway enrichment analysis was performed by “clusterProfiler” package of the R. The protein-protein interaction network was constructed, and the core genes associated with BTK were screened. The differences of the core genes’ expression between the BTK samples and normal samples were analyzed, and the area under the receiver operating characteristic curve was used to evaluate the diagnostic efficacy of the core genes. The CIBERSORT was used to evaluate the distribution of immune cells in each sample and to calculate the differences between the BTK samples and normal samples. Results 153 genes were up-regulated and 63 genes were down-regulated in BTK. WGCNA results indicated that the differential expression genes in BTK were mainly up-regulated, involving signaling pathways such as cholesterol metabolism and platelet activation; protein tyrosine phosphatase receptor type C (PTPRC), Spi-1 proto-oncogene (SPI1),colony stimulating factor 1 receptor (CSF1R), and Fc gamma receptor Ⅲa (FCGR3A) were probably the core genes in BTK, which have good diagnostic efficacy. BTK was positively correlated with the degree of infiltration of monocytes (r=0.419, P=0.037) and negatively correlated with the degree of infiltration of M2 macrophages (r=-0.491, P=0.013). Conclusion The BTK involved various signaling pathways such as cholesterol metabolism and platelet activation and was closely related to monocyte- and macrophage-mediated immune responses. PTPRC, SPI1, CSF1R, and FCGR3A may be the core genes of BTK.

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李见,王玉涛,王世信.下肢动脉硬化闭塞症膝下病变潜在机制的加权基因共表达网络和免疫浸润分析[J].中国动脉硬化杂志,2023,31(8):677~686.

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  • 收稿日期:2022-11-09
  • 最后修改日期:2023-05-04
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  • 在线发布日期: 2023-07-20