动脉粥样硬化坏死性凋亡关键基因的筛选与验证
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(1.广州医科大学附属清远医院(清远市人民医院),广东省清远市 511518;2.华智生物技术有限公司,湖南省长沙市 410000;3.大理大学药学院,云南省大理市 671000;4.桂林医学院公共卫生学院,;5.桂林医学院智能医学与生物技术学院,广西壮族自治区桂林市 541199)

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叶利经,硕士研究生,研究方向为心血管疾病的基础与临床研究,E-mail:3132375989@qq.com。

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国家自然科学基金项目(81870337)


Screening and validation of key genes involved in necroptosis in atherosclerosis
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1.Affiliated Qingyuan Hospital, Guangzhou Medical University, Qingyuan People's Hospital, Qingyuan, Guangdong 511518, China;2.Huazhi Biotechnology Co. Ltd, Changsha, Hunan 410000, China;3.College of Pharmacy, Dali University, Dali, Yunnan, China;4.School of Public Health, ;5.School of Intelligent Medicine and Biotechnology, Guilin Medical University, Guilin, Guangxi Zhuang Autonomous Region 541199, China)

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    目的]通过生物信息学方法筛选出动脉粥样硬化坏死性凋亡关键基因,并借助体外实验加以验证,从坏死性凋亡的角度来为预防和治疗动脉粥样硬化提供新策略。 [方法]从GEO数据库下载与动脉粥样硬化斑块相关的基因,从GeneCards数据库下载与坏死性凋亡相关的基因,将两者取交集从而获得动脉粥样硬化坏死性凋亡基因,进一步对基因的作用机制和信号通路进行GO和KEGG富集分析,并构建蛋白质-蛋白质相互作用(PPI)网络和筛选关键基因,最后用终浓度为100 mg/L的氧化型低密度脂蛋白(ox-LDL)处理巨噬细胞,通过RT-PCR和Western blot检测关键基因的表达情况。 [结果]共获得动脉粥样硬化坏死性凋亡基因81个,通过GO和KEGG富集分析发现其主要在内多肽酶活性的正向调节、IκB激酶(IKK)/核因子κB(NF-κB)信号传导和自噬信号通路等方面显著富集;利用Cytoscape软件中cytoHubba插件的5种算法得到HSPA8、STAT3、HMOX1、SQSTM1和FAS 5个关键基因。与正常对照组相比,ox-LDL处理的THP-1巨噬细胞中HMOX1基因呈高表达(P<0.05),而HSPA8、STAT3、SQSTM1和FAS基因表达则无明显变化(P>0.05);ox-LDL处理的RAW264.7巨噬细胞中HMOX1、SQSTM1基因呈高表达(P<0.05),而HSPA8、STAT3和FAS基因表达无明显变化(P>0.05)。THP-1巨噬细胞中HMOX1蛋白表达也相应升高。 [结论]HMOX1可能是动脉粥样硬化坏死性凋亡的关键基因,并有望成为动脉粥样硬化防治的新靶点。

    Abstract:

    Aim The key genes for necroptosis in atherosclerosis were screened by bioinformatics methods and verified with the help of in vitro experiments to provide new strategies for the prevention and treatment of atherosclerosis from the perspective of necroptosis. Methods Genes related to atherosclerotic plaques were downloaded from GEO database, and genes related to necroptosis were downloaded from GeneCards database and intersected to obtain atherosclerotic necroptosis genes, and the mechanism of action and signalling pathways of the genes were further analysed by GO and KEGG enrichment analysis, and the protein-protein interaction (PPI) network was constructed and screened for key genes.Finally, macrophages were treated with oxidized low density lipoprotein (ox-LDL) at a final concentration of 100 mg/L, and the expression of key genes was detected by RT-PCR and Western blot. Results A total of 81 atherosclerotic necroptosis genes were obtained. GO and KEGG enrichment analyses revealed that they were mainly enriched in the positive regulation of endopeptidase activity, IκB kinase (IKK)/nuclear factor-κB (NF-κB) signalling, and autophagy signalling pathway. Five key genes including HSPA8, STAT3, HMOX1, SQSTM1 and FAS were obtained by using five computational methods of Cytoscape software cytoHubba plug-in. Compared with the normal control group, the HMOX1 gene was highly expressed in THP-1 macrophages treated with ox-LDL (P<0.05), while the expression of the HSPA8, STAT3, SQSTM1 and FAS genes showed no significant changes (P>0.05); the HMOX1 and SQSTM1 genes were highly expressed in RAW264.7 macrophages treated with ox-LDL (P<0.05), while HSPA8, STAT3 and FAS genes showed no significant changes (P>0.05). The expression of HMOX1 protein in THP-1 macrophages was also increased. Conclusion HMOX1 may be the key gene of atherosclerotic necroptosis, and it is expected to become a new target for the prevention and treatment of atherosclerosis.

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叶利经,周福洋,白勒谢,郭闯闯,吴帅凯,潘玉芝,吴丹媚,赵国军.动脉粥样硬化坏死性凋亡关键基因的筛选与验证[J].中国动脉硬化杂志,2024,32(3):203~210.

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  • 收稿日期:2023-10-27
  • 最后修改日期:2023-12-27
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  • 在线发布日期: 2024-04-07